Zsuzsanna Lipták
Associate Professor
Department of Computer Science
University of Verona, Italy

email:
zsuzsanna DOT liptak AT univr DOT it


address:
University of Verona
Department of Computer Science
Strada le Grazie, 15
I-37134 Verona, Italy

office:
Ca' Vignal 2, room 1.79 (1st floor)
tel: +39 045 802-7032
fax: +39 045 802-7068


Student hours:
Outside of the semester by appointment (send me an email), in person or via zoom.



Here is my institutional page.


  This page is always under construction...


News:

Brief Vita

I am associate professor at the University of Verona, and have been working here since November 2011. I got my first degree (Diplom Mathematik) from Freie Universität in Berlin, Germany, and my PhD (in Computer Science) from Bielefeld University, Germany. My PhD thesis treated algorithmic problems in Mass Spectrometry, and was supervised by Sebastian Böcker (now in Jena, Germany). I have worked as a research assistant at ETH Zurich, Switzerland; as a research assistant and later postdoc at Bielefeld University, Germany; and as a postdoc at Salerno University, Italy, where I had a Marie Curie IEF fellowship. In addition, I have spent time as a visiting researcher at the following scientific institutions: Rényi Institute, Budapest (Hungary); the University of the Witwatersrand, Johannesburg (South Africa); and at the South African National Bioinformatics Institute (SANBI), Cape Town (South Africa).

I am member of the Algorithmic Bioinformatics and Natural Computing Group and the Algorithms Group of the Department of Computer Science of Verona University.

There is a (usually somewhat outdated) CV on my institutional page.


Research Interests

I work on string algorithms and other discrete and algorithmic problems, mostly arising in bioinformatics applications. In algorithmic bioinformatics, I have mostly worked on mass spectrometry data interpretation (genomics, proteomics, metabolomics) and on string distance measures for expression clustering (transcriptomics), but am interested in all algorithmic and combinatorial problems on discrete structures (strings, sequences, trees, graphs) arising in the context of biological applications. Recently I have started working on different aspects of the Burrows-Wheeler-Transform.

If you are interested in prefix normal words, there have been recent advances, here is a short writeup on open problems on prefix normal words (updated May 2021).

"Che cos'è la bioinformatica?" Vedi le slide di una mia presentazione per studenti di liceo, 7/3/2018.
(Introductory talk for high school students on Bioinformatics, given on 7 March 2018.)


Publications

You can find most of my publications at my DBLP entry or my Google Scholar page. If you can't access a paper, please write to me and I'll send you a copy.


Teaching (in Verona)

I currently teach the following courses: Previously in Verona:

Theses/Tesi

Progetti nell'ambito di sequenze/stringhe (genomiche e no), bioinformatica algoritmica, algoritmi su stringhe. Ho disponibile diversi argomenti sia per tesi (magistrali o triennali), che per stage/tirocinio/progetto. (E naturalmente parlo anche italiano...)

If you are a student who likes algorithms and strings (sequences), or in general topics in algorithmic bioinformatics, come and see me. I have topics both for small student projects ("internship"/"stage") or for bachelor or master theses.

Short Term Mobility (STM) projects are available for several destinations, depending on the subject.

You can also opt to do your thesis in Erasmus, in collaboration with one of the groups I collaborate with, e.g. in Bielefeld, Jena, Dortmund, or Budapest.


Students

PhD

Master thesis

Master project/tirocinio

Bachelor



Scientific events I am or have been involved in:

(PC = Program Committee, OC = Organizing Committee)

Recent scientific guests


Editorial Work



Erasmus

I am no longer ''referente per l'internazionalizzazione'' for the Teaching Board of Computer Science (CdS Laurea in informatica, Laurea in bioinformatica, LM Ingegneria e scienze informatiche, LM Medical bioinformatics). The new Referenti per l'Internazionalizzazione are Prof. Alessandra Di Pierro e Prof. Matteo Cristani.

I am still scientific coordinator for Erasmus+ exchange with Bielefeld University (Technical Faculty), Germany (only computer science and bioinformatics; for mathematics contact Prof. Di Persio, for biotechnology, Prof. Dall'Osto).

My other partner universities have passed to the following scientific coordinators: Please contact them if you are interested in doing an Erasmus semester in one of these universities.




More info coming soon.

In the meanwhile, you can read this poem by Roald Dahl which expresses wonderfully what I think about television.