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Algoritmi e Linguaggi per Bioinformatica: Algoritmi
Program of the project presentations. Updates are in red.
- Wed 11 July 9-12 - aula B
- Neighbour Joining Algorithm, additivity, and Fitch-Margoliash (M. Dallera, A. Turati, A. Mainente)
- suffix trees I (V. Potrich, M. Trentini)
- suffix trees II (E. Suku, D. Magagna)
- BWT (M. Roncador)
- Thu 12 July 8.30 - 11.30 - aula I
- string similarity/distance measures as filters for edit distance (A. Pontalto)
- semiglobal alignment (V. Rizzatti)
- multiple sequence alignment (B. Giuliari, A. Dal Molin)
- BLAST (A. Fagagnini, A. Ruffo, M. Pernigo)
- Fri 13 July 9.00 - 12.00 - aula I
- general and affine gap functions (S. Adami, L. Barbon)
- comparing similar sequences (M. D'Orsi)
- Neighbour Joining Algorithm (G. Manfrin)
- Branch-n-bound for Large Parsimony (F. Pellizzaro)
- BLAST (B. Cirulli, E. Vittoria)
- (cancelled: BLOSUM matrices (A. Zanolli))
- (cancelled: exact matching: KMP (A. Soregaroli, Ch. Regnoto, G. Tamburrino))
Please bring your own laptop and make sure you know how to project with it.