Massimo Delledonne Dipartimento di Biotecnologie
Università degli Studi di Verona




2017


Giuliani C., Pirazzini C., Delledonne M., Xumerle L., Descombes P., Marquis J., Mengozzi G., Monti D., Bellizzi D., Passarino G., Luiselli D., Franceschi C., Garagnani P. (2017) Centenarians as extreme phenotypes: An ecological perspective to get insight into the relationship between the genetics of longevity and age-associated diseases. Mech Ageing Dev. In press

 Piubelli C., Castagna A., Marchi G., Rizzi M., Busti F., Badar S., Marchetti M., De Gobbi M., Roetto A., Xumerle L., Suku E., Giorgetti A., Delledonne M., Olivieri O., Girelli D. (2017) Identification of new BMP6 pro-peptide mutations in patients with iron overload. Am J Hematol. In press

Kumar A., Castellano I., Patti F.P., Delledonne M., Abdelgawad H., Beemster G.T.S., Asard H., Palumbo A., Buia M.C. (2017) Molecular response of Sargassum vulgare to acidification at volcanic CO2 vents: insights from de novo transcriptomic analysis. Mol Ecol. 26: 2276-2290
[PDF]

D'Esposito D., Ferriello F., Molin A.D., Diretto G., Sacco A., Minio A., Barone A., Di Monaco R., Cavella S., Tardella L., Giuliano G., Delledonne M., Frusciante L., Ercolano M.R. (2017) Unraveling the complexity of transcriptomic, metabolomic and quality environmental response of tomato fruit. BMC Plant Biol. 17: 66
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2016

Chin C.S., Peluso P., Sedlazeck F.J., Nattestad M., Concepcion G.T., Clum A., Dunn C., O'Malley R., Figueroa-Balderas R., Morales-Cruz A., Cramer G.R., Delledonne M., Luo C., Ecker J.R., Cantu D., Rank D.R., Schatz M.C. (2016). Phased diploid genome assembly with single-molecule real-time sequencing. Nature Methods. 13: 1050-1054 [PDF]

Bombarely A., Moser M., Amrad A., Bao M., Bapaume L., Barry C.S., Bliek M., Boersma M.R., Borghi L., Bruggmann R., Bucher M., D'Agostino N., Davies K., Druege U., Dudareva N., Egea-Cortines M., Delledonne M., Fernandez-Pozo N., Franken P., Grandont L., Heslop-Harrison J.S., Hintzsche J., Johns M., Koes R., Lv X., Lyons E., Malla D., Martinoia .E, Mattson N.S., Morel P., Mueller L.A., Muhlemann J., Nouri E., Passeri V., Pezzotti M., Qi Q., Reinhardt D., Rich M., Richert-Pöggeler K.R., Robbins T.P., Schatz M.C., Schranz M.E., Schuurink R.C., Schwarzacher T., Spelt K., Tang H., Urbanus S.L., Vandenbussche M., Vijverberg K., Villarino G.H., Warner R.M., Weiss J., Yue Z., Zethof J., Quattrocchio F., Sims T.L., Kuhlemeier C. (2016). Nature Plants. 2: 16074 [PDF]

do Valle Í.F., Giampieri E., Simonetti G., Padella A., Manfrini M., Ferrari A., Papayannidis C., Zironi I., Garonzi M., Bernardi S., Delledonne M., Martinelli G., Remondini D., Castellani G. (2016) Optimized pipeline of MuTect and GATK tools to improve the detection of somatic single nucleotide polymorphisms in whole-exome sequencing data. BMC Bioinformatics. 17: 341
[PDF]

Pezzini F., Bettinetti L., Di Leva F., Bianchi M., Zoratti E., Carrozzo R., Santorelli F.M., Delledonne M., Lalowski M., Simonati A. (2016). Transcriptomic Profiling Discloses Molecular and Cellular Events Related to Neuronal Differentiation in SH-SY5Y Neuroblastoma Cells. Cell Mol Neurobiol.
37: 665-668 [PDF]

Ferbo L., Manzini P.M., Badar S., Campostrini N., Ferrarini A., Delledonne M., Francisci T., Tassi V., Valfrè A., Dall'omo A.M., D'antico S., Girelli D., Roetto A., De Gobbi M. (2016) Detection of a rare mutation in the ferroportin gene through targeted next generation sequencing. Blood Transfus. 14: 531-534
[PDF]

Tadiello A., Longhi S., Moretto M., Ferrarini A., Tononi P., Farneti B., Busatto N., Vrhovsek U., Dal Molin A., Avanzato C., Biasioli F., Cappellin L., Scholz M., Velasco R., Trainotti L., Delledonne M., Costa F. (2016). Interference with ethylene perception at receptor level sheds light on auxin and transcriptional circuits associated with climacteric ripening of apple fruit (Malus x domestica Borkh.). The Plant Journal
88: 963-975 [PDF]

Gagliardi S., Ricca I., Ferrarini A., Valente M., Grieco G.S., Piccolo G., Alfonsi E., Delledonne M., Cereda C. (2016) Palmoplantar Keratoderma and Charcot-Marie-Tooth: combination of two independent genetic diseases? Identification of two point mutations in CMT2 and PPK genes by whole exome sequencing. Br J Dermatol. in press

Bellin D., Delledonne M., Vandelle E. (2016). Detection of Peroxynitrite in Plants Exposed to Bacterial Infection. Methods Mol Biol. 1424: 191-200
[PDF]

Delaney S.K., Hultner M.L., Jacob H.J., Ledbetter D.H., McCarthy J.J., Ball M., Beckman K.B., Belmont J.W., Bloss C.S., Christman M.F., Cosgrove A., Damiani S.A., Danis T., Delledonne M., Dougherty M.J., Dudley J.T., Faucett W.A., Friedman J.R., Haase D.H., Hays T.S., Heilsberg S., Huber J., Kaminsky L., Ledbetter N., Lee W.H., Levin E., Libiger O., Linderman M., Love R.L., Magnus D.C., Martland A., McClure S.L., Megill S.E., Messier H., Nussbaum R.L., Palaniappan L., Patay B.A., Popovich B.W., Quackenbush J., Savant M.J., Su M.M., Terry S.F., Tucker S., Wong W.T., Green R.C. (2016). Toward clinical genomics in everyday medicine: perspectives and recommendations. Expert Rev Mol Diagn.
16: 521-532 [PDF]

Turroni F., Milani C., Duranti S., Mancabelli L., Mangifesta M., Viappiani A., Lugli G.A., Ferrario C., Gioiosa L., Ferrarini A., Li J., Palanza P., Delledonne M., van Sinderen D., Ventura M. (2016). Deciphering bifidobacterial-mediated metabolic interactions and their impact on gut microbiota by a multi-omics approach. ISME J.
10:1656-1668

Sabatini ME, Donà M, Leonetti P, Minio A, Delledonne M, Carbonera D, Confalonieri M, Giraffa G, Balestrazzi A. (2016). Depletion of tyrosyl-DNA phosphodiesterase 1α (MtTdp1α) affects transposon expression in Medicago truncatula. J Integr Plant Biol. 
58:618-622 [PDF]

Badar S., Busti F., Ferrarini A., Xumerle L., Bozzini P., Capelli P., Pozzi-Mucelli R., Campostrini N., De Matteis G., Marin Vargas S., Giorgetti A., Delledonne M., Olivieri O., Girelli D. (2016). Identification of novel mutations in hemochromatosis genes by targeted next generation sequencing in Italian patients with unexplained iron overload. Am J Hematol. 91: 420-425
[PDF]

Bassi D., Colla F., Gazzola S., Puglisi E., Delledonne M., Cocconcelli PS. (2016). Transcriptome analysis of Bacillus thuringiensis spore life, germination and cell outgrowth in a vegetable-based food model. Food Microbiol. 55: 73-85
[PDF]

2015

Venturini L, Delledonne M. (2015) Symbiotic plant-fungi interactions stripped down to the root. Nature Genetics 2015 47: 309-310 [PDF]

Udali  S., Guarini  P., Ruzzenente  A., Ferrarini  A., Guglielmi  A., Lotto  V., Tononi  P., Pattini  P., Moruzzi  S., Campagnaro  T., Conci  S., Olivieri  O., Corrocher  R., Delledonne  M., Choi  S., Friso  S. (2015). DNA methylation and gene expression profiles show novel regulatory pathways in hepatocellular carcinoma. Clinical Epigenetics 7: 43
[PDF]

Aversano R., Contaldi F., Ercolano M.R., Grosso V., Iorizzo M., Tatino F., Xumerle L., Dal Molin A., Avanzato C., Ferrarini A., Delledonne M., Sanseverino W., Aiese Cigliano R., Capella-Gutierrez S., Gabaldón T., Frusciante L., Bradeen J.M., Carputo D. (2015). The Solanum commersonii Genome Sequence Provides Insights into Adaptation to Stress Conditions and Genome Evolution of Wild Potato Relatives. Plant Cell 7: 954–968
[PDF]

Siozios S., Tosi L., Ferrarini A., Ferrari A., Tononi P., Bellin D., Gessler C., Maurhofer M., Delledonne M., Pertot I. (2015). Transcriptional reprogramming of the mycoparasitic fungus Ampelomyces quisqualis during the powdery mildew host-induced germination. Phytopathology 105: 199-209


Moliterni VM., Paris R., Onofri C., Orrù L., Cattivelli L., Pacifico D., Avanzato C., Ferrarini A., Delledonne M., Mandolino G. (2015). Early transcriptional changes in Beta vulgaris in response to low temperature. Planta. 242: 187-201
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Ferrarini A., Xumerle L., Griggio F., Garonzi M., Cantaloni C., Centomo C., Vargas SM., Descombes P., Marquis J., Collino S., Franceschi C., Garagnani P., Salisbury BA., Harvey JM., Delledonne M. (2015). The Use of Non-Variant Sites to Improve the Clinical Assessment of Whole-Genome Sequence Data. PLoS One 10:e0132180
[PDF]

Bartoletti-Stella A., Chiaro G., Calandra-Buonaura G., Contin M., Scaglione C., Barletta G., Cecere A., Garagnani P., Tieri P., Ferrarini A., Piras S., Franceschi C., Delledonne M., Cortelli P., Capellari S. (2015). A patient with PMP22-related hereditary neuropathy and DBH-gene-related dysautonomia. J Neurol. 262:2373-2381
[PDF]

Raggi S., Ferrarini A., Delledonne M., Dunand C., Ranocha P., De Lorenzo G., Cervone F., Ferrari S. (2015). The Arabidopsis thaliana Class III Peroxidase AtPRX71 Negatively Regulates Growth under Physiological Conditions and in Response to Cell Wall Damage. Plant Physiol. 169: 2513-2525
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Barabaschi D., Magni F., Volante A., Gadaleta A., Šimková H., Scalabrin S., Prazzoli M. L., Bagnaresi P., Lacrima K., Michelotti V., Desiderio F., Orrù L., Mazzamurro V., Fricano A., Mastrangelo A., Tononi P., Vitulo N., Jurman I., Frenkel Z., Cattonaro F., Morgante M., Blanco A., Doležel J., Delledonne M., Stanca A. M., Cattivelli L., Valè G. (2015). Physical Mapping of Bread Wheat Chromosome 5A: An Integrated Approach. Plant Genome, vol. 8, no. 3: 1-24
[PDF]

Horvath S., Pirazzini C., Bacalini M.G., Gentilini D., Di Blasio A.M., Delledonne M., Mari D., Arosio B., Monti D., Passarino G., De Rango F., D'Aquila P., Giuliani C., Marasco E., Collino S., Descombes P., Garagnani P., Franceschi C. (2015). Decreased epigenetic age of PBMCs from Italian semi-supercentenarians and their offspring. Aging 7:1159-1170
[PDF]


2014

Garagnani P., Pirazzini C., Giuliani C., Candela M, Brigidi P., Sevini F., Luiselli D., Bacalini M.G., Salvioli S., Capri M., Monti D., Mari D., Collino S., Delledonne M., Descombes P., Franceschi C. (2014). The three genetics (nuclear DNA, mitochondrial DNA and gut microbiome) of longevity in humans considered as metaorganisms. BioMed Res Int [PDF]

Aragona  M., Minio  A., Ferrarini  A., Valente  M.T., Bagnaresi  P., Orrù  L., Tononi  P., Zamperin  G., Infantino  A., Valè  G., Cattivelli  L., Delledonne  M. (2014). De novo genome assembly of the soil-borne fungus and tomato pathogen Pyrenochaeta lycopersici. BMC Genomics
[PDF]

Ercolano M.R., Sacco A., Ferriello F., D'Alessandro R., Tononi P., Traini A., Barone A., Zago E., Chiusano M.L., Buson G., Delledonne M., Frusciante L. (2014). Patchwork sequencing of tomato San Marzano and Vesuviano varieties highlights genome-wide variations. BMC Genomics 15: 138
[PDF]

Gauthier A., Trouvelot S., Kelloniemi J., Frettinger P., Wendehenne D., Daire X., Joubert J-M., Ferrarini A., Delledonne M., Flors V., Poinssot B.. (2014). The sulfated laminarin triggers a stress transcriptome before priming the SA- and ROS-dependent defenses during grapevine's induced resistance against Plasmopara viticola. PLoS ONE 9: e88145 [PDF]

Bellucci E., Bitocchi E., Ferrarini A., Benazzo A., Biagetti E., Klie S., Minio A., Rau D., Rodriguez M., Panziera A., Venturini L., Attene G., Albertini E., Jackson S.A., Nanni L., Fernie A.R., Nikoloski Z., Bertorelle G., Delledonne M., Papa R. (2014). Decreased Nucleotide and Expression Diversity and Modified Coexpression Patterns Characterize Domestication in the Common Bean. The Plant Cell 26: 1901–1912
[PDF]

Chen J., Vandelle E., Bellin D., Delledonne M. (2014). Detection and function of nitric oxide during the hypersensitive response in Arabidopsis thaliana: Where there's a will there's a way. Nitric Oxide
43: 81-88 [PDF]

Bulgari D., Minio A., Casati P., Quaglino F., Delledonne M., Bianco PA. (2014). Curtobacterium sp. genome sequencing underlines plant growth promotion-related traits. Genome Announc. e00592-14
[PDF]

Lanubile A., Ferrarini A., Maschietto V., Delledonne M., Marocco A., Bellin D. (2014). Functional genomic analysis of constitutive and inducible defense responses to Fusarium verticillioides infection in maize genotypes with contrasting ear rot resistance. BMC Genomics. 15:710
[PDF]

Degu A., Hochberg U., Sikron N., Venturini L., Buson G., Ghan R., Plaschkes I., Batushansky A., Chalifa-Caspi V., Mattivi F., Delledonne M., Pezzotti M., Rachmilevitch S., Cramer G.R., Fait A. (2014). Metabolite and transcript profiling of berry skin during fruit development elucidates differential regulation between Cabernet Sauvignon and Shiraz cultivars at branching points in the polyphenol pathway. BMC Plant Biol. 14: 188
[PDF]

Siozios S., Tosi L., Ferrarini A., Ferrari A., Tononi P., Bellin D., Gessler C., Maurhofer M., Delledonne M., Pertot I. (2014). Transcriptional reprogramming of the mycoparasitic fungus Ampelomyces quisqualis during the powdery mildew host-induced germination. Phytopathology
105: 199-209 [PDF]

2013


Da Silva C., Zamperin G., Ferrarini A., Minio A., Dal Molin A., Venturini L., Buson G., TononiP.,  Avanzato C., Zago E., Boido E., Dellacassa E., Gaggero C., Pezzotti M., Carrau F., Delledonne M. (2013). The high polyphenol content of Vitis vinifera cv. Tannat berries is conferred mostly by genes that are not shared with the reference genome. Plant Cell 25: 4777-4788. [PDF]

de Pinto M.C., Locato V., Sgobba A., Romero-Puertas M.D., Gadadeta C., Delledonne M., De Gara L. (2013). S-nitrosylation of ascorbate peroxidase is part of the programmed cell death signaling in tobacco BY-2 cells. Plant Physiol 163: 1766-1775 . [PDF]

Licciardello C., Torrisi B., Allegra M., Sciacca F., Roccuzzo G., Intrigliolo F., Reforgiato Recupero G., Tononi P., Delledonne M., Muccilli V. (2013). A Transcriptomic Analysis of Sensitive and Tolerant Citrus Rootstocks under Natural Iron Deficiency Conditions. J. Amer. Soc. Hort. Sci. 138: 487–498. [PDF]

Storci G., Bertoni S., De Carolis S., Papi A., Nati M., Ceccarelli C., Pirazzini C., Garagnani P., Ferrarini A., Buson G., Delledonne M., Fiorentino M., Capizzi E., Gruppioni E., Taffurelli M., Santini D., Franceschi C., Bandini G., Bonifazi F., Bonafé M. (2013). Slug/beta-catenin-dependent DNA damage signalling induces pro-inflammatory phenotype in hypoxic breast cancer stem cells. Am J Pathol. 183: 1688-1697 [PDF]

Landoni M., De Francesco A., Bellatti S., Delledonne M., Ferrarini A., Venturini L., Pilu R., Bononi M., Tonelli C. (2013). A mutation in the FZL gene of Arabidopsis causing alteration in chloroplast morphology results in a lesion mimic phenotype. J. Exp. Bot. 64: 4313-4328 [PDF]

Turroni F., Serafini F., Foroni E., Duranti S., O’Connell Motherway M., Taverniti V., Mangifesta M., Milani C., Viappiani A., Roversi T., Sánchez B., Santoni A., Gioiosa L., Ferrarini A., Delledonne M., Margolles A., Piazza L., Palanza P., Bolchi A., Guglielmetti S., van Sinderen D., Ventura M. (2013). The role of sortase-dependent pili of Bifidobacterium bifidum PRL2010 in modulating bacterium-host interactions. Proc Natl Acad Sci. USA 110: 11151-11156  [PDF]

Correa-Aragunde N., Foresi N., Delledonne M., Lamattina L. (2013). Auxin induces redox regulation of ascorbate peroxidase 1 activity by S-nitrosylation/denitrosylation balance resulting in changes of root growth pattern in Arabidopsis. J. Exp. Bot. 64: 3339-3349  [PDF]

Garagnani P., Giuliani C., Pirazzini C., Olivieri F., Bacalini M.G., Ostan R., Mari D., Passarino G., Monti D., Bonfigli A.R.0, Boemi M., Ceriello A., Genovese S., Sevini F., Luiselli D., Tieri P.,  Capri M., Salvioli S., Vijg J., Suh Y., Delledonne M., Testa R., Franceschi C. (2013). Centenarians as super‐controls to assess the biological relevance of genetic risk factors for common age‐related diseases: A proof of principle on type 2 diabetes. Aging 5: 373-385  [PDF]

Dal Santo S., Tornielli G., Zenoni S., Fasoli M., Farina L., Anesi A., Guzzo F., Delledonne M., Pezzotti M. (2013). The plasticity of the grapevine berry transcriptome. Genome Biol. 14: R54 [PDF]

Donà M., Confalonieri M., Minio A., Biggiogera M., Buttafava A., Raimondi E., Delledonne M., Ventura L., Sabatini M.E., Macovei A., Giraffa G., Carbonera D., Balestrazzi A. (2013). RNA-Seq analysis discloses early senescence and nucleolar dysfunction triggered by Tdp1α depletion in Medicago truncatula. J. Exp. Bot. 64: 1941-1951  [PDF]

Venturini L, Ferrarini A, Zenoni S, Tornielli GB, Fasoli M, Santo SD, Minio A, Buson G, Tononi P, Zago. Zamperin G., Bellin D., Pezzotti M., Delledonne M. (2013). De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. BMC Genomics 14: 41 [PDF]

Boscari A., del Giudice J., Ferrarini A., Venturini L., Zaffini A-L, Delledonne M., Puppo A. (2013). Expression dynamics of the Medicago truncatula transcriptome during the symbiotic interaction with Sinorhizobium meliloti: which role for nitric oxide? Plant Physiol  161: 425-439 [PDF]

Bellin D., Asai S., Delledonne M., Yoshioka H. (2013) Nitric Oxide as a Mediator for Defense Responses. Mol Plant-Microbe Interact  26: 271-277 [PDF]

Duranti S., Turroni F., Milani C., Foroni E., Bottacini F., Dal Bello F., Ferrarini A., Delledonne M., van Sinderen D., Ventura M. Exploration of genomic diversity and core genome of the Bifidobacterium adolescentis phylogenetic group by means of a polyphasic approach. (2013). Appl Environ Microbiol. 79: 336-46 [PDF]

 

2012


Perazzolli M., Moretto M., Fontana P., Ferrarini A., Velasco R., Moser C., Delledonne M., Pertot I. (2012). Downy mildew resistance induced by Trichoderma harzianum T39 in susceptible grapevines partially mimics transcriptional changes of resistant genotypes. BMC Genomics  13: 660 [PDF]

Bicego M., Lovato P., Perina A., Fasoli M., Delledonne M., Pezzotti M., Polverari A., Murino V. Investigating topic models' capabilities in expression microarray data classification. (2012) IEEE/ACM Trans Comput Biol Bioinform. 9: 1831-1836 [PDF]

Fasoli M., Dal Santo S., Zenoni S., Tornielli GB, Farina L., Zmboni A., Porceddu A., Venturini L., Bicego M., Murino V., Ferrarini A., Delledonne M., Pezzotti M. (2012). The grapevine expression atlas reveals a deep transcriptome shift driving the entire plant into a maturation program. Plant Cell 24: 3489-3505 [PDF]

Bottacini F., Milani C., Turroni F., Sanchez B., Foroni E., Duranti S., Serafini F., Viappiani A., Strati F, Ferrarini A., Delledonne M., Henrissat B., Coutinho P., Fitzgerald G.F., Margolles A., van Sinderen D., Ventura M. (2012). Bifidobacterium asteroides PRL2011 genome analysis reveals clues for colonization of the insect gut. PLoS One 7: e44229 [PDF]

Abate F., Acquaviva A., Paciello G., Ficarra E., Ferrarini A., Delledonne M., Soverini S., Martinelli G, Macii E. (2012). Bellerophontes: A RNA-Seq data analysis framework for chimeric transcript discovery based on accurate fusion model. Bioinformatics 28: 2114-2121 [PDF]

Iacobucci I., Ferrarini A., Sazzini M., Giacomelli E., Xumerle L., Lonetti A, Ferrari A., Papayannidis C., Malerba G., Luisella D., Boattini A., Garagnani P., Vitale A., Soverini S., Foà R., Baccarani M, Delledonne M., Martinelli G. (2012). Application of the Whole Transcriptome Shotgun Sequencing approach to the study of Philadelphia-Positive Acute Lymphoblastic Leukemia". Blood Cancer J. 2: e61 [PDF]


 
2011

Turroni F., Foroni E., Montanini B., Viappiani A., Strati F., Duranti S., Ferrarini A.,  Delledonne M., Ottonello S., van Sinderen D., Ventura M. (2011). Global genome transcription profiling of Bifidobacterium bifidum PRL2010 under in vitro conditions and identification of reference genes for quantitative Real-Time PCR. Appl Environ Microbiol. 20: 7408-7417 [PDF]

Vandelle E., Delledonne M. (2011). Peroxynitrite formation in plants. Plant Sci 181: 534-539 [PDF]

Turroni F, Foroni E, Serafini F, Viappiani A, Montanini B, Bottacini F, Ferrarini A, Bacchini PL, Rota C, Delledonne M, Ottonello S, van Sinderen D, Ventura M. (2011). Ability of Bifidobacterium breve to grow on different milk types: exploring milk metabolism through genome analysis. Appl Environ Microbiol. 77:7408-17 [PDF]

Zenoni S, D'Agostino N, Tornielli GB, Quattrocchio F, Chiusano ML, Koes R, Zethof J, Guzzo F, Delledonne M, Frusciante L, Gerats T, Pezzotti M. (2011). Revealing impaired pathways in the an11 mutant by high-throughput characterization of Petunia axillaris and Petunia inflata transcriptomes. Plant J. 68: 11-27 [PDF]

Mele C., Iatropoulos P., Donadelli R., Calabria A., Maranta R., Cassis P., Buelli S., Tomasoni S., Piras R., Krendel M., Bettoni S., Morigi M., Delledonne M., Pecoraro C., Abbate I., Capobianchi M.R., Hildebrandt F., Otto E., Schaefer F., Macciardi F., Ozaltin F., Emre S., Ibsirlioglu T., Benigni A., Remuzzi G. and Noris M. (2011). MYO1E mutations and childhood familial focal segmental glomerulosclerosis. New Engl J Med 365:295-306 [PDF]

Malacarne G, Vrhovsek U, Zulini L, Cestaro A, Stefanini M, Mattivi F, Delledonne M, Velasco R, Moser C. (2011) Resistance to Plasmopara viticola in a grapevine segregating population is associated with stilbenoid accumulation and with specific host transcriptional responses. BMC Plant Biol. 2011 11:114 [PDF]

Gaupels F., Spiazzi-Vandelle E., Yang D., Delledonne M. (2011). Detection of peroxynitrite accumulation in Arabidopsis thaliana during the hypersensitive defense response. Nitric Oxide 25:222-228 [PDF]

Sestili S.l, Polverari A., Luongo L., Ferrarini A., Scotton M., Hussain J., Delledonne M., Ficcadenti N., Belisario A. (2011). Distinct colonization patterns and cDNA-AFLP transcriptome profiles in compatible and incompatible interactions between melon and different races of Fusarium oxysporum f. sp. melonis. BMC Genomics 12:122 [PDF]

Soverini S., Score J., Iacobucci I., Poerio A., Lonetti A., Gnani A., Colarossi S., Ferrari A., Castagnetti F., Rosti G., Cervantes F., Hochhaus A., Delledonne M., Ferrarini A., Sazzini M., Luiselli D., Baccarani M., Cross N.C., Martinelli G. (2011). IDH2 somatic mutations in chronic myeloid leukemia patients in blast crisis. Leukemia 25:178-181 [PDF]

 

2010

Turroni F., Bottacini F., Foroni E., Mulder I., Kim J.H., Zomer A., Garcia B.S., Bidossi A., Ferrarini A., Giubellini V., Delledonne M., Henrissat B., Coutinho P., Oggioni M., Fitzgerald G.F., Mills D., Margolles A., Kelly D., van Sinderen D., Ventura M. (2010). Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging. Proc Natl Acad Sci. USA 107: 19514–19519 [PDF]

De Matteo A., Sacco A., Anacleria M., Pezzotti M., Delledonne M., Ferrarini A., Frusciante L.,  Barone A. (2010). The ascorbic acid content of tomato fruits is associated with the expression of genes involved in pectin degradation. BMC Plant Biology 10: 163 [PDF]

Zamboni A., Di Carli M., Guzzo F., Stocchero M., Zenoni S., Ferrarini A., Tononi P., Toffali K., Desiderio A., Lilley K., Pè E., Benvenuto E., Delledonne M., Pezzotti M. (2010).  Identification of putative stage-specific grapevine berry biomarkers and omics data integration into networks. Plant Physiol. 154:1439-1459 [PDF]

Turroni F., Foroni E., O'Connell Motherway M., Bottacini F., Giubellini V., Zomer A., Ferrarini A., Delledonne M., Zhang Z., van Sinderen D., Ventura M. (2010). Characterization of the serpin-encoding gene of Bifidobacterium breve 210B. Appl. Environ. Microbiol. 76: 3206-19 [PDF]

The International Cancer Genome Consortium. (2010). International network of cancer genome projects. Nature 464: 993-998 [PDF]

Zenoni S., Ferrarini A., Giacomelli E., Xumerle L., Fasoli M., Malerba G., Bellin D., Pezzotti M., Delledonne M. (2010). Characterization of transcriptional complexity during berry development in Vitis vinifera using RNA-Seq.  Plant Physiol 152: 1787-1795 [PDF]

Polesani M., Bortesi L., Ferrarini A., Zamboni A., Fasoli M., Zadra C., Lovato A., Pezzotti M., Delledonne M., Polverari A. (2010). General and species-specific transcriptional responses to downy mildew infection in a susceptible (Vitis vinifera) and a resistant (V. riparia) grapevine species. BMC Genomics 11: 117 [PDF]


2009

Ventura M., Turroni F., Zomer A., Foroni E., Giubellini V., Bottacini F., Canchaya C., Claesson M.J., He F., Mantzourani M., Mulas L., Ferrarini A., Gao B., Delledonne M., Henrissat B., Coutinho P., Oggioni M., Gupta R.S., Zhang Z., Beighton D., Fitzgerald G.F., O’Toole P.W., van Sinderen D. (2009). The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity. PLoS Genetics 5 (12): e1000785 [PDF]

Bellin D., Ferrarini A., Chimento A., Kaiser O., Levenkova N., Bouffard P., Delledonne M. (2009). Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species. BMC Genomics 10: 555 [PDF]

Mica E., Piccolo V., Delledonne M., Ferrarini A., Pezzotti M., Casati C., Del Fabbro C., Valle G., Policriti A., Morgante M., Pesole G., Pè M.E., Horner D.S. (2009). High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera. BMC Genomics 10: 558 [PDF]

Leitner M., Vandelle E., Gaupels F., Bellin D., Delledonne M. (2009) NO signals in the haze. Curr. Opin. Plant Biol. 12: 451-458 [PDF]

Cecconi D., Orzetti S., Vandelle E., Rinalducci S., Zolla L., Delledonne M. (2009) Protein nitration during defence response in Arabidopsis thaliana. Electrophoresis 14: 2460-2468 [PDF]

Omrane S., Ferrarini A., D’Apuzzo E., Rogato A, Delledonne M., Chiurazzi M. (2009) Nitrogen status and symbiotic competence, a transcriptomic analysis in Lotus japonicus. New Phytol. 183: 380-394 [PDF]

De Michele R., Formentin E., Todesco M., Toppo S., Carimi F., Zottini M., Barizza E., Ferrarini A., Delledonne M., Fontana P., Lo Schiavo F. (2009) Transcriptome analysis of Medicago truncatula leaf senescence: similarities and differences in metabolic and transcriptional regulations as compared to Arabidopsis, nodule senescence, and nitric oxide signalling. New Phytol. 181: 563-575 [PDF]


2008

Romero-Puertas M.C., Campostrini N., Mattè A., Righetti P.G., Perazzolli M., Zolla L., Roepstorff P., Delledonne M. (2008). Proteomic analysis of S-nitrosylated proteins in Arabidopsis thaliana undergoing hypersensitive response. Proteomics 8: 1459-1469 [PDF]

Ferrarini A., De Stefano M., Baudouin E., Pucciariello C., Polverari A., Puppo A., Delledonne M (2008). Expression of Medicago truncatula genes responsive to nitric oxide, in pathogenic and symbiotic conditions. Mol. Plant-Microbe Interact. 21: 781-790 [PDF]

Vandelle E. and Delledonne M. (2008). Methods for nitric oxide detection during plant-pathogen interactions. Methods in Enzymol. 437: 575-594 [PDF]

Haegi A., Bonardi V., dall'Aglio E., Glissant D., tumino G., Collins N., bulgarelli D., Infantino A., Stanca M., Delledonne M., Valè G. (2008) Histological and molecular analysis of Rdg2a barley 1 resistance to leaf stripe. Mol. Plant Pathol. 9: 463-478 [PDF]

Denoeud F., Aury JM., Da Silva C., Noel B., Rogier O., Delledonne M., Morgante M., Valle G.,  Wincker P., Scarpelli C., Jaillon O., Artiguenave F. (2008) Annotating genomes with massive-scale RNA-sequencing. Genome Biology 9: R175 [PDF]

Zamboni A., Minoia L., Ferrarini A., Tornielli G.B., Zago E., Delledonne M. and Pezzotti M. (2008) Molecular analysis of post-harvest withering in grape by AFLP transcriptional profiling. J. Exp. Bot. 59:  4145-4159 [PDF]

 

2007

Belenghi B., Romero-Puertas M., Vercammen D., Brackenier A., Inzé D., Delledonne M., Van Breusegem F. (2007). Metacaspase activity of Arabidopsis thaliana is regulated by S-nitrosylation of a critical cysteine residue. J Biol. Chem. 282: 1352-1358 [PDF]

Innocenti G, Pucciariello C, Le Gleuher M, Hopkins J, de Stefano M, Delledonne M, Puppo A, Baudouin E, Frendo P. (2007). Glutathione synthesis is regulated by nitric oxide in Medicago truncatula roots. Planta 225: 1597-1602 [PDF]

Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyère C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pè ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quétier F, Wincker P. (2007). The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 449: 463-467 [PDF]

Romero-Puertas M.C., Laxa M., Mattè A., Zaninotto F., Finkemeier I., Jones A.M.E.,  Perazzolli M., Vandelle E., Dietz K.J., Delledonne M. (2007). S-nitrosylation of peroxiredoxin II E promotes peroxynitrite-mediated tyrosine nitration. Plant Cell 19: 4120-4130 [PDF]

 

2006

Perazzolli M., Romero-Puertas M.,  Delledonne M. (2006). Modulation of nitric oxide bioactivity by plant haemoglobins. J. Exp. Bot. 57:479-488 [PDF]

Zaninotto F., La Camera S., Polverari A., Delledonne M. (2006). Cross-talk between reactive nitrogen and oxygen species during the hypersensitive disease resistance response. Plant Physiol. 141: 379-383 [PDF]

Zago E., Morsa S., Dat J.F., Alard P., Ferrarini A., Inzè D., Delledonne M., Van Breusegem F. (2006) Nitric oxide- and hydrogen peroxide-responsive gene regulation during cell death induction in tobacco. Plant Physiol. 141: 404-411 [PDF]

 

2005

Delledonne M. (2005) NO news is good news for plants. Curr. Opin. Plant Biol. 8: 390-396 [PDF]

Boccara M., Mills C., Zeier J., Anzi C., Lamb C., Poole R., Delledonne M. (2005) Flavohaemoglobin HmpX from Erwinia chrysanthemi confers nitrosative stress tolerance and affects the plant hypersensitive reaction by intercepting nitric oxide produced by the host. Plant J. 43:226-237 [PDF]

 

2004

Murgia I., de Pinto M.C., Delledonne M., Soave C., De Gara L. (2004) Comparative effects of various nitric oxide donors on ferritin regulation, programmed cell death and cell redox state in plant cells. J. Plant Physiol. 161: 777-783. [PDF]

Romero-Puertas M.C., Perazzolli M., ZagoE., Delledonne M. (2004) Nitric oxide signaling functions in plant-pathogen interactions. Cell. Microbiol. 6: 795-803 [PDF]

Zeier J., Delledonne M., Severi E., Sonoda M., Lamb C. (2004) Genetic elucidation of nitric oxide signaling in incompatible plant-pathogen interactions. Plant Physiol. 136: 2875-2886. [PDF]

Perazzolli M., Dominici P., Romero-Puertas M., Zago E., Zeier J., Sonoda M., Lamb C., Delledonne M. (2004) Arabidopsis non-symbiotic hemoglobin AHb1 modulates nitric oxide bioactivity. Plant Cell 16: 2785-2794. [PDF]

 

2003

Delledonne M., Polverari A., Murgia I. (2003). Nitric oxide-mediated signaling functions and change in genes expression during the plant hypersensitive response. Antioxid. Redox Signal. 5: 33-42 [PDF]

Belenghi B., Acconcia F., Trovato M., Perazzolli M., Bocedi A., Polticelli F., Ascenzi P., Delledonne M. (2003). AtCYS1, a cystatin from Arabidopsis thaliana, suppresses hypersensitive cell death. Eur. J. Biochem. 270: 2593-2604 [PDF]

Polverari A., Molesini B., Pezzotti M., Buonaurio R., Marte M., Delledonne M. (2003). Nitric oxide-mediated transcriptional changes in Arabidopsis thaliana. Mol. Plant-Microbe Interact. 16: 1094-1105 [PDF]

Romero-Puertas M.C., Delledonne M. (2003). Nitric oxide signaling in plant-pathogens interaction. IUBMB Life. 55: 579-583 [PDF]

 

2002

Delledonne M., Murgia I., Ederle D., Sbicego P.F., Biondani A., Polverari A., Lamb C. (2002). Reactive oxygen intermediates modulate nitric oxide signaling in the plant hypersensitive disease resistance response. Plant Physiol. Biochem. 40: 605-610 [PDF]

Murgia I., Delledonne M., Soave C. (2002). Nitric oxide mediates iron-induced ferritin accumulation in Arabidopsis thaliana. Plant J. 30: 521-528 [PDF]

 

2001

Delledonne M., Allegro G., Belenghi B., Balestrazzi A., Picco F., Levine A., Zelasco S., Calligari P., Confalonieri M. (2001) Transformation of white poplar (Populus alba L.) with a novel Arabidopsis thaliana cysteine proteinase inhibitor and analysis of insect pest resistance. Mol. Breed. 7: 35-42 [PDF]

Caccia R., Delledonne M., Levine A., De Pace C. and Mazzucato A. (2001). Apoptosis-like DNA fragmentation in leaves and floral organs precedes their developmental senescence. Plant Biosystems 135: 183-190

Delledonne M., Zeier J., Marocco A., Lamb C. (2001). Signal interactions between nitric oxide and reactive oxygen intermediates in the plant hypersensitive disease resistance response. Proc. Natl. Acad. Sci. USA 98:13454-13459 [PDF]

 

2000

Tosca A., Delledonne M., Furini A., Belenghi B., Fogher C., Frangi P. (2000). Transformation of Korean chrysanthemum (Dendranthema zawadskii X D. X grandiflorum) and insertion of the maize autonomous element Ac using Agrobacterium tumefaciens. J. Genetics and Breed. 54: 19-24.

Confalonieri M., Belenghi B., Balestrazzi A., Negri S., Facciotto G., Schenone G., Delledonne M. (2000). Transformation of elite white poplar (Populus alba L.) cv. ‘Villafranca’ and evaluation of herbicide resistance. Plant Cell Rep. 19: 978-982 [PDF]

Marchetti S., Delledonne M., Fogher C., Chiabà C., Chiesa F., Savazzini F., Giordano A. (2000). Soybean Kunitz, C-II and Pi-IV inhibitor genes confer different levels of insect resistance to tobacco and potato transgenic plants. Theor. Appl. Genet. 101: 519-526 [PDF]

 

1999

Solomon M., Belenghi B., Delledonne M., Levine A. (1999) The involvement of cysteine proteases and protease inhibitor genes  in the regulation of programmed cell death in plants. Plant Cell 11:431-443. [PDF]

 

1998

Confalonieri M., Allegro G., Balestrazzi A., Fogher C. &  Delledonne M. (1998). Regeneration of Populus nigra transgenic plants expressing a Kunitz proteinase inhibitor (KTi3) gene. Mol. Breed. 4:137-145. [PDF]

Delledonne M., Xia Y., Dixon R. and Lamb C. (1998). Nitric oxide functions as a signal in plant disease resistance. Nature 394:585-558. [PDF]

 

1997

 Xu X., Dietrich C.R., Delledonne M., Xia Y., Wen T., Robertson D., Nikolau B., Schnable P. (1997). Sequence analysis of the cloned glossy8 gene of maize suggests that it may code for a b-ketoacyl reductase required for the biosynthesis of cuticular waxes. Plant Physiol. 115:501-510. [PDF]



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